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1. bambu bambu Public

   Reference-guided transcript discovery and quantification for long read RNA-Seq data

   R 244 27

2. bambu-pipe bambu-pipe Public

   Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu

   Nextflow 22 1

3. m6anet m6anet Public

   Detection of m6A from direct RNA-Seq data

   Python 131 21

4. xpore xpore Public

   Identification of differential RNA modifications from nanopore direct RNA sequencing

   Python 166 24

5. awesome-nanopore awesome-nanopore Public

   A curated list of awesome nanopore analysis tools.

   310 58

6. awesome-genomic-skills awesome-genomic-skills Public

   A curated list of awesome genomics and bioinformatics agentic skills, MCPs and benchmarks for Claude Code, Copilot, Codex, Cursor, Gemini CLI, etc

   20 4